Specific isolation of exosomes using magnetic nanosphere
https://doi.org/10.18705/2311-4495-2025-12-1-67-79
EDN: TJMXSB
Abstract
Background. Exosomes belong to the class of extracellular vesicles that are secreted by cells and circulate in biological fluids, mediating intercellular communication and signaling in various pathological processes, including modulation of cancer development and tumor microenvironment. Exosomes released by cancer cells at early stages of disease progression expressing specific membrane markers, which makes exosomes a promising biomarker of the disease by liquid biopsy. The main obstacle to the use of exosomes as markers of disease development is the lack of a convenient, inexpensive and rapid method for their isolation and detection. Objective. The aim of this study was to develop a platform for exosome isolation and detection of exosome protein membrane markers. Design and methods. In this work, magnetic nanoparticles functionalized with anti-EpCAM aptamer were developed for selective capture of tumor cell exosomes. The efficiency of magnetic nanoparticles was tested on exosomes derived from EpCAM-positive colon cancer cell line (HT29). To ensure high sensitivity of exosomes from pathologically cells, vesicles were pre-labeled with a lipophilic fluorescent dye (3,3’ dioctadecyloxacarbocyanine). Results. It was shown that magnetic nanoparticles bound with anti-EpCAM aptamer effectively captured exosomes from the HT29 culture medium. The detection limit of about 107 exosomes/ml was obtained using flow cytometry method. Conclusion. This study demonstrates an effective method for selective isolation of exosomes from cancer cell, which is promising for diagnostics and monitoring of oncological diseases.
About the Authors
E. O. MoiseevaRussian Federation
Ekaterina O. Moiseeva, PhD student
Moscow
Competing Interests:
The authors declare no conflict of interest
D. D. Kozhevnikova
Russian Federation
Daria D. Kozhevnikova, PhD student
Moscow
Competing Interests:
The authors declare no conflict of interest
I. S. Sergeev
Russian Federation
Igor S. Sergeev, PhD student
Moscow
Competing Interests:
The authors declare no conflict of interest
M. A. Blindman
Russian Federation
Maria A. Blindman, PhD student
Moscow
Competing Interests:
The authors declare no conflict of interest
O. V. Zaborova
Russian Federation
Olga V. Zaborova, PhD (Chem.), Senior Researcher, Faculty of Chemistry
Moscow
Competing Interests:
The authors declare no conflict of interest
V. S. Chernyshev
Russian Federation
Vasiliy S. Chernyshev, PhD (Tech.), Head of Laboratory
Moscow
Competing Interests:
The authors declare no conflict of interest
A. A. Yakovlev
Russian Federation
Alexander A. Yakovlev, Dr. Sci. (Biol.), Senior Researcher
Moscow
Competing Interests:
The authors declare no conflict of interest
D. A. Gorin
Russian Federation
Dmitry A. Gorin, Dr. Sci. (Chem.), Professor
Moscow
Competing Interests:
The authors declare no conflict of interest
A. M. Yashchenok
Russian Federation
Alexey M. Yashchenok, Dr. Sci. (Phys.-Math.), Associate Professor
Bolshoy Boulevard, 30, p. 1, Moscow, 121205
Competing Interests:
The authors declare no conflict of interest
References
1. Thery C, Ostrowski M, Segura E. Membrane vesicles as conveyors of immune responses. Nat Rev Immunol. 2009;9(8):581–593. DOI: 10.1038/nri2567.
2. Colombo M, Raposo G, Thery C. Biogenesis, secretion, and intercellular interactions of exosomes and other extracellular vesicles. Annu Rev Cell Dev Biol. 2014;30:255–289. DOI: 10.1146/annurevcellbio-101512-122326.
3. Ridder K, Keller S, Dams M, et al. Extracellular vesicle-mediated transfer of genetic information between the hematopoietic system and the brain in response to inflammation. PLoS Biol. 2014;12(6):e1001874. DOI: 10.1371/journal.pbio.1001874.
4. Peinado H, Alečković M, Lavotshkin S, et al. Melanoma exosomes educate bone marrow progenitor cells toward a pro-metastatic phenotype through MET. Nat Med. 2012;18(6):883–891. DOI: 10.1038/nm.2753.
5. Tenchov R, Sasso JM, Wang X, et al. Exosomes — nature’s lipid nanoparticles, a rising star in drug delivery and diagnostics. ACS Nano. 2022;16(11):17802–17846. DOI: 10.1021/acsnano.2c08764.
6. Yang L, Jia J, Li S. Advances in the application of exosomes identification using surface-enhanced Raman spectroscopy for the early detection of cancers. Front Bioeng Biotechnol. 2022;9:808933. DOI: 10.3389/fbioe.2021.808933.
7. Melo SA, Luecke LB, Kahlert C, et al. Glypican-1 identifies cancer exosomes and detects early pancreatic cancer. Nature. 2015;523(7559):177–182. DOI: 10.1038/nature14581.
8. Witwer KW, Buzás EI, Bemis LT, et al. Standardization of sample collection, isolation and analysis methods in extracellular vesicle research. J Extracell Vesicles. 2013;2:20360. DOI: 10.3402/jev.v2i0.20360.
9. Chen BY, Sung CWH, Chen C, et al. Advances in exosomes technology. Clin Chim Acta. 2019;493:14– 19. DOI: 10.1016/j.cca.2019.02.021.
10. Sunkara V, Park J, Han J, et al.Exosome precipitation by ionic strength modulation: ExoPRISM. ACS Appl Mater Interfaces. 2023;15(12):56807–56819. DOI: 10.1021/ acsami.3c12345.
11. Baranyai T, Herczeg K, Onódi Z, et al. Isolation of exosomes from blood plasma: Qualitative and quantitative comparison of ultracentrifugation and size exclusion chromatography methods. PLoS ONE. 2015;10(12):e0145686. DOI: 10.1371/journal.pone.0145686.
12. Yashchenok AM, Chernyshev VS, Konovalova EV, et al. Anti-CD63-oligonucleotide functionalized magnetic beads for the rapid isolation of small extracellular vesicles and detection of EpCAM and HER2 membrane receptors using DARPin probes. Anal Sens. 2023;3:e202200059. DOI: 10.1002/anse.202200059.
13. Boriachek K, Islam MN, Gopalan V, et al. Quantum dot-based sensitive detection of disease specific exosome in serum. Analyst. 2017;142(12):2211–2219. DOI: 10.1039/C7AN00672A.
14. Chang M, Wang Q, Qin W, et al. Rational synthesis of aptamer-functionalized polyethylenimine-modified magnetic graphene oxide composites for highly efficient enrichment and comprehensive metabolomics analysis of exosomes. Anal Chem. 2020;92(22):15497–15505. DOI:10.1021/acs.analchem.0c03405.
15. Chen S, Shiesh SC, Lee GB, et al. Twostep magnetic bead-based (2MBB) techniques for immunocapture of extracellular vesicles and quantification of microRNAs for cardiovascular diseases: A pilot study. PLoS ONE. 2020;15(12):e0229610. DOI: 10.1371/journal.pone.0229610.
16. Li Q, Lv M, Lv L, et al. Identifying HER2 from serum-derived exosomes in advanced gastric cancer as a promising biomarker for assessing tissue HER2 status and predicting the efficacy of trastuzumab-based therapy. Cancer Med. 2023;12(4):4110–4124. DOI: 10.1002/cam4.5289.
17. Runz S, Keller S, Rupp C, et al. Malignant ascitesderived exosomes of ovarian carcinoma patients contain CD24 and EpCAM. Gynecol Oncol. 2007;107(3):563–571. DOI: 10.1016/j.ygyno.2007.08.064.
18. Kawakami K, Fujita Y, Kato T, et al. Diagnostic potential of serum extracellular vesicles expressing prostatespecific membrane antigen in urologic malignancies. Sci Rep. 2021;11:15000. DOI: 10.1038/s41598-021-94532-7.
19. Li W, Shao B, Liu C, et al. Noninvasive diagnosis and molecular phenotyping of breast cancer through microbead-assisted flow cytometry detection of tumorderived extracellular vesicles. Small Methods. 2018;2(10): 1800122. DOI: 10.1002/smtd.201800122.
20. Suárez H, Gámez-Valero A, Reyes R, et al. A bead-assisted flow cytometry method for the semiquantitative analysis of extracellular vesicles. Sci Rep. 2017;7:11271. DOI: 10.1038/s41598-017-11264-3.
21. Dose C, Huppert V, Kauling B, et al. Multisort cell separation method. US Patent 10,123,456, filed 15 March 2018, and issued 6 November 2018.
22. Diamandis EP, Christopoulos TK. The biotin- (strept)avidin system: principles and applications in biotechnology. Clin Chem. 1991;37(5):625– 636. DOI: 10.1093/clinchem/37.5.625.
23. Hermanson GT. The reactions of bioconjugation. In: Bioconjugate Techniques. 3rd ed. Academic Press. 2013:229–258. ISBN: 978-0-12-382239-0.
24. Vashist SK, Lam E, Hrapovic S, et al. Immobilization of antibodies and enzymes on 3-aminopropyltriethoxysilane-functionalized bioanalytical platforms for biosensors and diagnostics. Chem Rev. 2014;114(21):11083–11130. DOI: 10.1021/cr5000943.
25. van Oss CJ, Giese RF, Bronson PM, et al. Macroscopic-scale surface properties of streptavidin and their influence on aspecific interactions between streptavidin and dissolved biopolymers. Colloids Surf B Biointerfaces. 2003;30(1–2):25–36. DOI: 10.1016/S0927-7765(03)00029-5.
26. Keller L, Werner S, Pantel K. Biology and clinical relevance of EpCAM. Cell Stress. 2019;3(6):165–180. DOI: 10.15698/cst2019.06.189.
27. Unthank JL, Lash JM, Nixon JC, et al. Evaluation of carbocyanine-labeled erythrocytes for microvascular measurements. Microvasc Res. 1993;45(2):193–210. DOI: 10.1006/mvre.1993.1019.
28. Zou P, Chen H, Paholak HJ, et al. Noninvasive fluorescence resonance energy transfer imaging of in vivo premature drug release from polymeric nanoparticles. Mol Pharm. 2013;10(11):4185–4194. DOI: 10.1021/mp400502y.
29. Haugland RP. Antibody conjugates for cell biology. Curr Protoc Cell Biol. 2000;6:16.15.1–16.15.22. DOI: 10.1002/0471143030.cb1605s00.
Review
For citations:
Moiseeva E.O., Kozhevnikova D.D., Sergeev I.S., Blindman M.A., Zaborova O.V., Chernyshev V.S., Yakovlev A.A., Gorin D.A., Yashchenok A.M. Specific isolation of exosomes using magnetic nanosphere. Translational Medicine. 2025;12(1):67-79. (In Russ.) https://doi.org/10.18705/2311-4495-2025-12-1-67-79. EDN: TJMXSB