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Assay of frequency and spectrum of genetic variants in TTN in healthy russian population

https://doi.org/10.18705/2311-4495-2021-8-5-29-37

Abstract

Background. Gene TTN associated with all types of cardiomyopathy, however its large size (294 b.p.) warrants a lot of individual unique genetic variants or variants with low frequency, that aggravates their interpretation. Besides that nowadays there is no data about spectrum of variants in this gene in healthy Russian population. Recognition frequency and spectrum of variants in gene TTN in healthy Russian population will allow us to use it for interpretation results of molecular genetic research for patients with different heart pathology, and define prognosis for different heart diseases.

Objective. Recognize frequency and spectrum of single nucleotide and truncating variants in gene TTN in healthy Russian population and compare it with international data bases, and evaluate level of pathogenicity these variants and their distributing across titin structure.

Design and methods. 192 men in age 55,8±6,6 years were tested with next-generation sequencing. Identified genetic variants were confirmed by Sanger sequencing. Results. Allele missense variant frequency (with frequency less than 0.1%) in TTN in healthy Russian population amount to 15.1 %, and truncating variants — 0.52 %. 37,9 % of them were variants of unknown significance, 62 % — likely-benign and 0.1 % — benign. There was no pathological and likely-pathological variants. Identified genetic variants distributed throughout the titin structure.

Conclusion. Received result is congruent с international data bases and researches. Expended laboratory method (Next generation sequencing and confirmation with Sanger sequencing) can be used both in clinical practice, and in creating data bases of genetic variants in healthy Russian population.

About the Authors

Yu. A. Vakhrushev
Almazov National Medical Research Centre
Russian Federation

Vakhrushev Yuriy A., assistant, Department of Clinical Laboratory Diagnostics and Genetics

Akkuratova str. 2, Saint Petersburg, 197341



A. A. Kozyreva
Almazov National Medical Research Centre
Russian Federation

Kozyreva Alexandra A., PhD, senior researcher, Institute of Molecular Biology and Genetics

Saint Petersburg



S. V. Zhuk
Almazov National Medical Research Centre
Russian Federation

Zhuk Sergey V., junior researcher, Research Laboratory of Molecular and Cellular Modeling and Gene Therapy, World-class research centre for personalized medicine

Saint Petersburg



O. P. Rotar
Almazov National Medical Research Centre
Russian Federation

Rotar Oksana P., Candidate of Medical Sciences, Head of the Research Laboratory of Epidemiology of Arterial Hypertension

Saint Petersburg



A. A. Kostareva
Almazov National Medical Research Centre
Russian Federation

Kostareva Anna A., MD, DrSci, Director of the Institute of Molecular Biology and Genetics

Saint Petersburg



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Review

For citations:


Vakhrushev Yu.A., Kozyreva A.A., Zhuk S.V., Rotar O.P., Kostareva A.A. Assay of frequency and spectrum of genetic variants in TTN in healthy russian population. Translational Medicine. 2021;8(5):29-37. (In Russ.) https://doi.org/10.18705/2311-4495-2021-8-5-29-37

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ISSN 2311-4495 (Print)
ISSN 2410-5155 (Online)